1887
Volume 37, Issue 3
  • ISSN 0176-4225
  • E-ISSN: 1569-9714
USD
Buy:$35.00 + Taxes

Abstract

Abstract

Sicoli & Holton (2014) (PLoS ONE 9:3, e91722) use computational phylogenetics to argue that linguistic data from the putative, but likely, Dene-Yeniseian macro-family are better compatible with a homeland in Beringia (i.e., northeastern Siberia plus northwestern Alaska) than with one in central Siberia or deeper Asia. I show that a more careful examination of the data invalidates this conclusion: in fact, linguistic data do not support Beringia as the homeland. In the course of showing this, I discuss, without requiring a deep mathematical background, a number of methodological issues concerning computational phylogenetic analyses of linguistic data and drawing inferences from them. The aim is to contribute to making computational phylogenetics less of a black box for historical linguists. I conclude with a brief overview of the current evidence bearing on the Dene-Yeniseian homeland from linguistics, archaeology, folklore studies and genetics, and suggest current best practice for linguistic phylogenetics, the use of which would have helped to avoid some of the problems in Sicoli and Holton’s Dene-Yeniseian study, and in turn the percolation of those problems into subsequent synthetic interdisciplinary research.

Loading

Article metrics loading...

/content/journals/10.1075/dia.17038.yan
2020-07-15
2024-12-12
Loading full text...

Full text loading...

References

  1. Berezkin, Yuriy Evgenyevich
    2010 Mifologičeskie obyasneniya smertnosti čeloveka i problema proiskhoždeniya na-dene [Mythological explanations for the mortality of man, and the problem of Na-Dene origins]. InOt bytiya k inobytiyu. Folklor i pogrebal’nyj ritual v tradicionnykh kul’turakh Sibiri i Ameriki [From being to other-being. Folklore and mortuary rite in the traditional cultures of Siberia and the Americas], 7–50. Saint Petersburg: MAE RAN.
  2. Bouckaert, Remco, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut & Alexei J. Drummond
    2014 BEAST 2: A software platform for Bayesian evolutionary analysis. PLoS Computational Biology10(4). e1003537. 10.1371/journal.pcbi.1003537
    https://doi.org/10.1371/journal.pcbi.1003537 [Google Scholar]
  3. Bouckaert, Remco, Philippe Lemey, Michael Dunn, Simon J. Greenhill, Alexander V. Alekseyenko, Alexei J. Drummond, Russell D. Gray, Marc A. Suchard & Quentin D. Atkinson
    2012 Mapping the origins and expansion of the Indo-European language family. Science337. 957–960. 10.1126/science.1219669
    https://doi.org/10.1126/science.1219669 [Google Scholar]
  4. Brooks, Stephen P. & Andrew Gelman
    1998 General methods for monitoring convergence of iterative simulations. Statistical Science7(4). 434–455.
    [Google Scholar]
  5. Campbell, Lyle
    2011 Review of “The Dene-Yeniseian connection”. International Journal of American Linguistics77(3). 445–451. 10.1086/660977
    https://doi.org/10.1086/660977 [Google Scholar]
  6. Clark, Peter U., Arthur S. Dyke, Jeremy D. Shakun, Anders E. Carlson, Jorie Clark, Barbara Wohlfarth, Jerry X. Mitrovica, Steven W. Hostetler & A. Marshall McCabe
    2009 The last glacial maximum. Science325(5941). 710–714. 10.1126/science.1172873
    https://doi.org/10.1126/science.1172873 [Google Scholar]
  7. Dos Reis, Mario & Ziheng Yang
    2013 The unbearable uncertainty of Bayesian divergence time estimation. Journal of Systematics and Evolution5(1). 30–43. 10.1111/j.1759‑6831.2012.00236.x
    https://doi.org/10.1111/j.1759-6831.2012.00236.x [Google Scholar]
  8. Drummond, Alexei J. & Remco R. Bouckaert
    2015Bayesian evolutionary analysis with BEAST. Cambridge: Cambridge University Press. 10.1017/CBO9781139095112
    https://doi.org/10.1017/CBO9781139095112 [Google Scholar]
  9. Flegontov, Pavel, N. Ezgi Altinisik, Piya Changmai, Nadin Rohland, Swapan Mallick, Deborah A. Bolnick, Francesca Candilio, Olga Flegontova, Choongwon Jeong, Thomas K. Harper, Denise Keating, Douglas J. Kennett, Alexander M. Kim, Thiseas C. Lamnidis, Iñigo Olalde, Jennifer Raff, Robert A. Sattler, Pontus Skoglund, Edward J. Vajda, Sergey Vasilyev, Elizaveta Veselovskaya, M. Geoffrey Hayes, Dennis H. O’Rourke, Ron Pinhasi, Johannes Krause, David Reich & Stephan Schiffels
    2017 Paleo-Eskimo genetic legacy across North America. Unpublished preprint, https://www.biorxiv.org/content/10.1101/203018v1. 10.1101/203018
    https://doi.org/10.1101/203018
  10. Flegontov, Pavel, Piya Changmai, Anastassiya Zidkova, Maria D. Logacheva, N. Ezgi Altınışik, Olga Flegontova, Mikhail S. Gelfand, Evgeny S. Gerasimov, Ekaterina E. Khrameeva, Olga P. Konovalova, Tatiana Neretina, Yuri V. Nikolsky, George Starostin, Vita V. Stepanova, Igor V. Travinsky, Martin Tříska, Petr Tříska & Tatiana V. Tatarinova
    2016 Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry. Scientific Reports6. 20768. doi:  10.1038/srep20768
    https://doi.org/10.1038/srep20768 [Google Scholar]
  11. Gernhard, Tanja
    2008 The conditioned reconstructed process. Journal of Theoretical Biology253(4). 769–778. 10.1016/j.jtbi.2008.04.005
    https://doi.org/10.1016/j.jtbi.2008.04.005 [Google Scholar]
  12. Ho, Simon Y. W. & Sebastián Duchêne
    2014 Molecular-clock methods for estimating evolutionary rates and timescales. Molecular Ecology23. 5947–5965. 10.1111/mec.12953
    https://doi.org/10.1111/mec.12953 [Google Scholar]
  13. Hoffecker, John F., Scott A. Elias, Dennis H. O’Rourke, G. Richard Scott & Nancy H. Bigelow
    2016 Beringia and the global dispersal of modern humans. Evolutionary Anthropology. Issues, News and Reviews25(2). 64–78. 10.1002/evan.21478
    https://doi.org/10.1002/evan.21478 [Google Scholar]
  14. Kassian, Alexei
    2016 Global lexicostatistical database. Na-Dene family: Athapaskan group. Available atstarling.rinet.ru
  15. Kibrik, Andrej A.
    1993 Transitivity increase in Athabaskan languages. InBernard Comrie & Maria Polinsky (eds.), Causatives and transitivity, 47–67. Amsterdam: Benjamins. 10.1075/slcs.23.03kib
    https://doi.org/10.1075/slcs.23.03kib [Google Scholar]
  16. Kiparsky, Paul
    2015 New perspectives in historical linguistics. InClaire Bowern & Bethwyn Evans (eds.), The Routledge handbook of historical linguistics, 64–102. London: Routledge.
    [Google Scholar]
  17. Kolipakam, Vishnupriya, Fiona M. Jordan, Michael Dunn, Simon J. Greenhill, Remco Bouckaert, Russell D. Gray & Annemarie Verkerk
    2018 A Bayesian phylogenetic study of the Dravidian language family. Proceedings of the Royal Society B5(3). 171504.
    [Google Scholar]
  18. Krauss, Michael E.
    1968 Noun classification systems in Athapaskan, Eyak, Tlingit and Haida verbs. International Journal ofAmerican Linguistics34(3). 194–203. 10.1086/465014
    https://doi.org/10.1086/465014 [Google Scholar]
  19. 1969 On the classifiers in the Athapaskan, Eyak and Tlingit verb. International Journal of American Linguisticsmemoir24, supplement to issue4. 51–83.
    [Google Scholar]
  20. Leer, Jeff
    2008 Recent advances in AET comparison. Available atwww.uaf.edu/anla/collections/search/resultDetail.xml?id=CA965L2008b
  21. Lewis, Paul O.
    2001 A likelihood approach to estimating phylogeny from discrete morphological character data. Systematic Biology50(6). 913–925. 10.1080/106351501753462876
    https://doi.org/10.1080/106351501753462876 [Google Scholar]
  22. Maurits, Luke, Robert Forkel, Gereon A. Kaiping & Quentin D. Atkinson
    2017 BEASTling: A software tool for linguistic phylogenetics using BEAST 2. PLoS ONE12(8). e0180908. 10.1371/journal.pone.0180908
    https://doi.org/10.1371/journal.pone.0180908 [Google Scholar]
  23. Moreno-Mayar, J. Víctor, Lasse Vinner, Peter de Barros Damgaard, Constanza de la Fuente, Jeffrey Chan, Jeffrey P. Spence, Morten E. Allentoft, Tharsika Vimala, Fernando Racimo, Thomaz Pinotti, Simon Rasmussen, Ashot Margaryan, Miren Iraeta Orbegozo, Dorothea Mylopotamitaki, Matthew Wooller, Clement Bataille, Lorena Becerra-Valdivia, David Chivall, Daniel Comeskey, Thibaut Devièse, Donald K. Grayson, Len George, Harold Harry, Verner Alexandersen, Charlotte Primeau, Jon Erlandson, Claudia Rodrigues-Carvalho, Silvia Reis, Murilo Q. R. Bastos, Jerome Cybulski, Carlos Vullo, Flavia Morello, Miguel Vilar, Spencer Wells, Kristian Gregersen, Kasper Lykke Hansen, Niels Lynnerup, Marta Mirazón Lahr, Kurt Kjær, André Strauss, Marta Alfonso-Durruty, Antonio Salas, Hannes Schroeder, Thomas Higham, Ripan S. Malhi, Jeffrey T. Rasic, Luiz Souza, Fabricio R. Santos, Anna-Sapfo Malaspinas, Martin Sikora, Rasmus Nielsen, Yun S. Song, David J. Meltzer & Eske Willerslev
    2018 Early human dispersals within the Americas. Science362. 6419 and eaav2621. doi:  10.1126/science.aav2621
    https://doi.org/10.1126/science.aav2621 [Google Scholar]
  24. Neal, Radford
    2008 The harmonic mean of the likelihood: Worst Monte Carlo Method Ever. UToronto. https://radfordneal.wordpress.com/2008/08/17/-the-harmonic-mean-of-the-likelihood-worst-monte-carlo-method-ever/
  25. Nikolaev, Sergei
    2014 Toward the reconstruction of Proto-Na-Dene. Journal of Language Relationship11. 103–123. 10.31826/jlr‑2014‑110112
    https://doi.org/10.31826/jlr-2014-110112 [Google Scholar]
  26. Potter, Ben A.
    2011 Archaeological patterning in Northeast Asia and Northwest North America: An examination of the Dene-Yeniseian hypothesis. InJames Kari, Ben A. Potter & Edward Vajda (eds.), The Dene-Yeniseian connection, 138–167. Fairbanks: ANLC.
    [Google Scholar]
  27. Raftery, Adrian E., Michael A. Newton, Jaya M. Satagopan & Pavel N. Krivitsky
    2007 Estimating the integrated likelihood via posterior simulation using the harmonic mean identity. InJ. M. Bernardo, M. J. Bayarri, J. O. Berger, A. P. Dawid, D. Heckerman, A. F. M. Smith & M. West (eds.), Bayesian statistics 8, 1–45. Oxford: Oxford University Press.
    [Google Scholar]
  28. Rice, Keren
    2000 Voice and valency in the Athapaskan family. InR. M. W. Dixon & Alexandra Y. Aikhenvald (eds.), Changing valency. Case studies in transitivity, 173–235. Cambridge: Cambridge University Press. 10.1017/CBO9780511627750.007
    https://doi.org/10.1017/CBO9780511627750.007 [Google Scholar]
  29. Ritchie, Andrew M., Nathan Lo & Simon Y. W. Ho
    2017 The impact of the tree prior on molecular dating of data sets containing a mixture of inter- and intraspecies sampling. Systematic Biology66(3). 413–425.
    [Google Scholar]
  30. Ronquist, Fredrik, John Huelsenbeck & Maxim Teslenko
    2011 MrBayes version 3.2 manual. nbisweden.github.io/MrBayes/manual.html
    [Google Scholar]
  31. Ronquist, Fredrik, Seraina Klopfstein, Lars Vilhelmsen, Susanne Schulmeister, Bebra L. Murray & Alexandr P. Rasnitsyn
    2012a A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera. Systematic Biology61(6). 973–999. 10.1093/sysbio/sys058
    https://doi.org/10.1093/sysbio/sys058 [Google Scholar]
  32. Ronquist, Fredrik, Paul van der Mark & John P. Huelsenbeck
    2009 Bayesian phylogenetic analysis using MrBayes. Theory. Practice. InThe phylogenetic handbook, 2nd edn., 210–266. Cambridge: Cambridge University Press. 10.1017/CBO9780511819049.009
    https://doi.org/10.1017/CBO9780511819049.009 [Google Scholar]
  33. Ronquist, Fredrik, Maxim Teslenko, Paul van der Mark, Daniel L. Ayres, Aaron Darling, Sebastian Höhna, Bret Larget, Liang Liu, Marc A. Suchard & John P. Huelsenbeck
    2012b MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology61(3). 539–542. 10.1093/sysbio/sys029
    https://doi.org/10.1093/sysbio/sys029 [Google Scholar]
  34. Sicoli, Mark A. & Gary Holton
    2014 Linguistic phylogenies support back-migration from Beringia to Asia. PLoS ONE9(3). e91722. 10.1371/journal.pone.0091722
    https://doi.org/10.1371/journal.pone.0091722 [Google Scholar]
  35. Skoglund, Pontus & David Reich
    2016 A genomic view of the peopling of the Americas. Current Opinion in Genetics and Development41. 27–35. 10.1016/j.gde.2016.06.016
    https://doi.org/10.1016/j.gde.2016.06.016 [Google Scholar]
  36. Starostin, George
    2012 Dene-Yeniseian: A critical assessment. Journal of Language Relationship8. 117–138. 10.31826/jlr‑2012‑080109
    https://doi.org/10.31826/jlr-2012-080109 [Google Scholar]
  37. Tamm, Erika, Toomas Kivisild, Maere Reidla, Mait Metspalu, David Glenn Smith, Connie J. Mulligan, Claudio M. Bravi, Olga Rickards, Cristina Martinez-Labarga, Elsa K. Khusnutdinova, Sardana A. Fedorova, Maria V. Golubenko, Vadim A. Stepanov, Marina A. Gubina, Sergey I. Zhadanov, Ludmila P. Ossipova, Larisa Damba, Mikhail I. Voevoda, Jose E. Dipierri, Richard Villems & Ripan S. Malhi
    2007 Beringian standstill and spread of Native American founders. PLoS ONE2(9). e829. doi:  10.1371/journal.pone.0000829
    https://doi.org/10.1371/journal.pone.0000829 [Google Scholar]
  38. Thorne, Jeffrey L. & Hirohisa Kishino
    2002 Divergence time and evolutionary rate estimation with multilocus data. Systematic Biology51(5). 689–702. 10.1080/10635150290102456
    https://doi.org/10.1080/10635150290102456 [Google Scholar]
  39. Vajda, Edward J.
    2011 A Siberian link with Na-Dene languages. InJames Kari, Ben A. Potter & Edward J. Vajda (eds.), The Dene-Yeniseian connection, 33–99. Fairbanks: ANLC.
    [Google Scholar]
  40. 2012 The Dene-Yeniseian connection: A reply to G. Starostin. Journal of Language Relationship8. 138–152. 10.31826/jlr‑2012‑080110
    https://doi.org/10.31826/jlr-2012-080110 [Google Scholar]
  41. 2013 Vestigial possessive morphology in Na-Dene and Yeniseian. InSharon Hargus, Edward Vajda & Daniel Hieber (eds.), Working papers in Athabaskan (Dene) languages 2012, vol.11Alaska Native Language Center Working Papers, Fairbanks: ANLC.
    [Google Scholar]
  42. 2015 Valency properties of the Ket verb clause. InAndrej Malchukov & Bernard Comrie (eds.), Valency classes in the world’s languages, 629–668. Mouton de Gruyter.
    [Google Scholar]
  43. 2017a Overview of the Dene-Yeniseian linguistic hypothesis. Supplementary Information section 10 of bioRxiv preprint Flegontov et al. (2017) 10.1093/acrefore/9780199384655.013.31
    https://doi.org/10.1093/acrefore/9780199384655.013.31 [Google Scholar]
  44. 2017b Patterns of innovation and retention in templatic polysynthesis. InMichael Fortescue, Marianne Mithun & Nicholas Evans (eds.), The Oxford handbook of polysynthesis, 363–391. Oxford: Oxford University Press.
    [Google Scholar]
  45. 2018 Dene-Yeniseian: progress and unanswered questions. Diachronica35(2). 277–295. 10.1075/dia.18001.vaj
    https://doi.org/10.1075/dia.18001.vaj [Google Scholar]
  46. Watson, Traci
    2017 Is theory about peopling of the Americas a bridge too far? [news feature]. Proceedings of the National Academy of Sciences114(22). 5554–5557. 10.1073/pnas.1705966114
    https://doi.org/10.1073/pnas.1705966114 [Google Scholar]
  47. Wilson, Joseph A. P.
    2016 The union of two worlds: Reconstructing elements of Proto-Athabaskan folklore and religion. Folklore127(1). 26–50. 10.1080/0015587X.2015.1119976
    https://doi.org/10.1080/0015587X.2015.1119976 [Google Scholar]
  48. Xie, Wangang, Paul O. Lewis, Yu Fan, Lynn Kuo & Ming-Hui Chen
    2011 Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Systematic Biology60(2). 150–160. 10.1093/sysbio/syq085
    https://doi.org/10.1093/sysbio/syq085 [Google Scholar]
  49. Yang, Ziheng
    1993 Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Molecular Biology and Evolution10(6). 1396–1401.
    [Google Scholar]
  50. Yanovich, Igor
    2018 The effect of dictionary omissions on phylogenies computationally inferred from lexical data. Language Dynamics and Change8(1). 78–107. 10.1163/22105832‑00801007
    https://doi.org/10.1163/22105832-00801007 [Google Scholar]
/content/journals/10.1075/dia.17038.yan
Loading
/content/journals/10.1075/dia.17038.yan
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was successful
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error